2MBO
K11-linked Diubiquitin average solution structure at pH 6.8, 0 mM NaCl
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N IPAP HSQC | 75 uM [U-99% 15N] ubiquitin, 20 mM sodium phosphate | 93% H2O/7% D2O | 6.8 | ambient | 296 | ||
2 | 2D 1H-15N HSQC | 75 uM [U-99% 15N] ubiquitin, 20 mM sodium phosphate | 93% H2O/7% D2O | 6.8 | ambient | 296 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
in-house RDC (orientation) and MTSL (distance) | Ub/Ub orientation determined from RDCs via alignment tensors, and z-distance refined using site-directed spin labeling distance constraints (MTSL on distal position 36) | Sparky |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 1 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | data analysis | Sparky | Goddard | |
2 | collection | Sparky | Goddard | |
3 | processing | Sparky | Goddard | |
4 | data analysis | Sparky | Bruker Biospin | |
5 | collection | Sparky | Bruker Biospin | |
6 | processing | Sparky | Bruker Biospin | |
7 | data analysis | Sparky | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
8 | collection | Sparky | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
9 | processing | Sparky | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
10 | refinement | in-house |