2LND

Solution NMR Structure of DE NOVO DESIGNED PROTEIN, PFK fold, Northeast Structural Genomics Consortium Target OR134


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.3 mM [U-100% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
22D 1H-13C HSQC1.3 mM [U-100% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
33D HNCO1.3 mM [U-100% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
43D CBCA(CO)NH1.3 mM [U-100% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
53D HNCACB1.3 mM [U-100% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
63D 1H-13C arom NOESY1.3 mM [U-100% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
73D simutaneous 13C-aromatic,13C-aliphatic,15N edited 1H-1H NOESY1.3 mM [U-100% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
82D 1H-13C HSQC1.15 mM [U-5% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
92D 1H-15N HSQC1.15 mM [U-5% 13C; U-100% 15N] OR13495% H2O/5% D2O6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2VarianINOVA600
3VarianINOVA600
NMR Refinement
MethodDetailsSoftware
molecular dynamics, simulated annealing, torsion angle dynamics, distance geometryCNS
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
2structure solutionCNSBrunger, Adams, Clore, Gros, Nilges and Read
3geometry optimizationCNSBrunger, Adams, Clore, Gros, Nilges and Read
4refinementCYANA3.0Guntert, Mumenthaler and Wuthrich
5geometry optimizationCYANA3.0Guntert, Mumenthaler and Wuthrich
6structure solutionCYANA3.0Guntert, Mumenthaler and Wuthrich
7data analysisAutoStructure2.1Huang, Tejero, Powers and Montelione
8refinementAutoStructure2.1Huang, Tejero, Powers and Montelione
9data analysisAutoAssign2.1Zimmerman, Moseley, Kulikowski and Montelione
10chemical shift assignmentAutoAssign2.1Zimmerman, Moseley, Kulikowski and Montelione
11processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
12data analysisXEASYBartels et al.
13peak pickingXEASYBartels et al.
14chemical shift assignmentXEASYBartels et al.
15collectionTopSpinBruker Biospin
16collectionVnmrJVarian
17data analysisSparkyGoddard
18geometry optimizationTALOS+Shen, Cornilescu, Delaglio and Bax
19structure validationPSVSBhattacharya, Montelione