2LLE

Computational design of an eight-stranded (beta/alpha)-barrel from fragments of different folds


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
23D HNCA0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
33D HNCACB0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
43D C(CO)NH0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
53D CCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
63D CCH-COSY0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
72D PLUSH-TACSY0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
83D HNHA0.5 mM [U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
93D HNHB0.5 mM [U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
103D 1H-15N NOESY0.5 mM [U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
113D 1H-13C NOESY0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
123D CNH-NOESY0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
133D CCH-NOESY0.5 mM [U-100% 13C; U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
143D NNH-NOESY0.5 mM [U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
152D 15N-filtered 1H-1H NOESY0.5 mM [U-100% 15N] CheYHisF-sfr_RM, 50 mM potassium phosphate, 300 mM potassium chloride90% H2O/10% D2O3507.5ambient313
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III600
2BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingNon-bonded function including Ramachandran database potentialTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number50
Conformers Submitted Total Number17
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2processingTopSpinBruker Biospin
3chemical shift assignmentSparkyGoddard
4data analysisSparkyGoddard
5structure solutionX-PLOR NIH2.21Schwieters, Kuszewski, Tjandra and Clore
6refinementX-PLOR NIH2.21Schwieters, Kuszewski, Tjandra and Clore