2LGH

Solution NMR structure of the AHSA1-like protein AHA_2358 from Aeromonas hydrophila refined with NH RDCs, Northeast Structural Genomics Consortium Target AhR99.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
22D 1H-13C HSQC aliphatic0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
32D 1H-13C HSQC aromatic0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
42D 1H-15N HSQC0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT100% D2O0.26.5ambient298
52D 1H-13C HSQC0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT100% D2O0.26.5ambient298
62D 1H-13C HSQC-CT1.0 mM U-100% 15N and 5% 13C biosynthetically directed protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient298
73D 1H-15N NOESY0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
83D 1H-13C NOESY_aliph0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
93D HNCO0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
103D HNCACB0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
113D CBCA(CO)NH0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
123D 1H-13C NOESY_arom0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
133D HN(CO)CA0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
143D HBHA(CO)NH0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
153D C(CCO)NH0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
163D HCCH-COSY0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT100% D2O0.26.5ambient298
173D HCCH-TOCSY0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
183D CCH-TOCSY0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT100% D2O0.26.5ambient298
194D CC-NOESY0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT100% D2O0.26.5ambient298
202D 1H-13C HSQC aromatic0.8 mM [U-100% 13C; U-100% 15N] protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 0.02 % sodium azide, 10 mM DTT90% H2O/10% D2O0.26.5ambient298
212D 1H-15N hetNOE1.0 mM U-100% 15N and 5% 13C biosynthetically directed protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient298
222D 1H-15N HSQC_His1.0 mM U-100% 15N and 5% 13C biosynthetically directed protein, 20 mM MES, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.26.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS water refinement + RDCsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number150
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2008Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2collectionVNMR6.1CVarian
3collectionTopSpin2.1.4Bruker Biospin
4data analysisAutoStructure2.2.1Huang, Tejero, Powers and Montelione
5structure solutionX-PLOR NIH2.25Schwieters, Kuszewski, Tjandra and Clore
6refinementCNS1.3Brunger, Adams, Clore, Gros, Nilges and Read
7data analysisSparky3.113Goddard
8refinementPSVS1.4Bhattacharya and Montelione
9chemical shift assignmentAutoAssign2.30Zimmerman, Moseley, Kulikowski and Montelione
10structure solutionPdbStat5.4(PdbStat)-Roberto Tejero and Gaetano T. Montelione
11chemical shift autoassignmentPINE Server1.0Bahrami, Markley, Assadi, and Eghbalnia
12structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich