2LFE

Solution NMR structure of N-terminal domain of human E3 ubiquitin-protein ligase HECW2, Northeast structural genomics consortium (NESG) target ht6306A


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
23D HNCA0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
33D CBCA(CO)NH0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
43D HBHA(CO)NH0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
53D HCCH-TOCSY0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
63D HCCH-TOCSY0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
73D 1H-15N NOESY0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
83D 1H-13C NOESY aliphatic0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
93D 1H-13C NOESY aromatic0.5 mM [U-13C; U-15N] protein, 10 mM MOPS, 450 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 1 mM benzamidine90% H2O/10% D2O4506.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
restrained molecular dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number16
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2peak pickingSparkyGoddard
3chemical shift assignmentFMCLemak,Steren,Llinas, Arrowsmith
4data analysisTALOSCornilescu, Delaglio and Bax
5validationPSVSBhattacharya and Montelione
6structure solutionCYANAGuntert, Mumenthaler and Wuthrich
7refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read