2L8D
Structure/function of the LBR Tudor domain
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.9 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.9 | ambient | 298 | |
3 | 3D CBCA(CO)NH | 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.9 | ambient | 298 | |
4 | 3D HNCA | 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.9 | ambient | 298 | |
5 | 3D HNCACB | 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.9 | ambient | 298 | |
6 | 3D HCCH-TOCSY | 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.9 | ambient | 298 | |
7 | 3D 1H-15N NOESY | 20 mM sodium phosphate, 100 mM sodium chloride | 90% H2O/10% D2O | 0.1 | 6.9 | ambient | 298 | |
8 | 3D 1H-13C NOESY aliphatic | 20 mM sodium phosphate, 100 mM sodium chloride | 100% D2O | 0.1 | 6.9 | ambient | 298 | |
9 | 2D 1H-13C HSQC aromatic | 20 mM sodium phosphate, 100 mM sodium chloride | 100% D2O | 0.1 | 6.9 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DRX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing, torsion angle dynamics | NMRView |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | peak picking | NMRView | Johnson, One Moon Scientific | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | dihedral angle restraints | TALOS | Cornilescu, Delaglio and Bax | |
6 | structure quality analysis | ProcheckNMR | Laskowski and MacArthur | |
7 | structure quality analysis | WHAT IF | Vriend | |
8 | molecular images | MOLMOL | Koradi, Billeter and Wuthrich | |
9 | collection | TopSpin | Bruker Biospin | |
10 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
11 | refinement | CYANA |