2L4A

NMR structure of the DNA-binding domain of E.coli Lrp


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domain, 50 mM potassium phosphate, 5 mM beta-mercaptoethanol90% H2O/10% D2O0.056.5ambient298
22D 1H-13C HSQC2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domain, 50 mM potassium phosphate, 5 mM beta-mercaptoethanol90% H2O/10% D2O0.056.5ambient298
33D CBCA(CO)NH2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domain, 50 mM potassium phosphate, 5 mM beta-mercaptoethanol90% H2O/10% D2O0.056.5ambient298
43D C(CO)NH2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domain, 50 mM potassium phosphate, 5 mM beta-mercaptoethanol90% H2O/10% D2O0.056.5ambient298
53D HCCH-TOCSY2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domain, 50 mM potassium phosphate, 5 mM beta-mercaptoethanol90% H2O/10% D2O0.056.5ambient298
63D HNCACB2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domain, 50 mM potassium phosphate, 5 mM beta-mercaptoethanol90% H2O/10% D2O0.056.5ambient298
74D 15N-13C edited NOESY2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domain, 50 mM potassium phosphate, 5 mM beta-mercaptoethanol90% H2O/10% D2O0.056.5ambient298
84D 13C-131C edited NOESY2 mM [U-99% 13C; U-99% 15N] Lrp DNA-binding domian, 50 mM potassium phosphate, 2 mM DTT100% D2O0.056.5ambient298
92D 1H-15N HSQC80-150 uM [U-99% 13C; U-99% 15N] Lrp DNA-biinding domain, 30 mM potassium phosphate, 2 mM beta-mercaptoethanol, 20 mM potassium chloride90% H2O/10% D2O0.056.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
distance geometry, simulated annealingANSIG
NMR Ensemble Information
Conformer Selection Criteriaminimized average structure and 25 structures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number26
Representative Model1 (minimized average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentANSIG3.3Kraulis
2data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4structure solutionX-PLORBrunger
5refinementX-PLORBrunger