2L3C

Solution structure of ADAR2 dsRBM1 bound to LSL RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-15N] protein-1, 1 mM USL RNA-290% H2O/10% D2O07.6ambient310
22D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] protein-3, 1 mM USL RNA-490% H2O/10% D2O07.6ambient310
33D HNCA1 mM [U-100% 13C; U-100% 15N] protein-3, 1 mM USL RNA-490% H2O/10% D2O07.6ambient310
43D HN(CO)CA1 mM [U-100% 13C; U-100% 15N] protein-3, 1 mM USL RNA-490% H2O/10% D2O07.6ambient310
53D HNCACB1 mM [U-100% 13C; U-100% 15N] protein-3, 1 mM USL RNA-490% H2O/10% D2O07.6ambient310
62D 1H-1H TOCSY1 mM [U-15N] protein-1, 1 mM USL RNA-290% H2O/10% D2O07.6ambient310
73D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] protein-3, 1 mM USL RNA-490% H2O/10% D2O07.6ambient310
83D 1H-15N NOESY1 mM [U-15N] protein-1, 1 mM USL RNA-290% H2O/10% D2O07.6ambient310
93D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] protein-3, 1 mM USL RNA-490% H2O/10% D2O07.6ambient310
102D 1H-13C HSQC1 mM [U-100% 15N] protein-9, 1 mM [U-13C; U-15N]-Gua,Ura USL RNA-10100% D2O07.6ambient310
112D 1H-13C HSQC1 mM [U-100% 15N] protein-11, 1 mM [U-13C; U-15N]-Ade,Cyt USL RNA-12100% D2O07.6ambient310
123D 1H-13C NOESY1 mM [U-100% 15N] protein-9, 1 mM [U-13C; U-15N]-Gua,Ura USL RNA-10100% D2O07.6ambient310
133D 1H-13C NOESY1 mM [U-100% 15N] protein-11, 1 mM [U-13C; U-15N]-Ade,Cyt USL RNA-12100% D2O07.6ambient310
143D 1H-13C filtered-edited NOESY1 mM [U-100% 13C; U-100% 15N] protein-7, 1 mM USL RNA-8100% D2O07.6ambient310
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
2BrukerAVANCE600
3BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealingTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number40
Conformers Submitted Total Number20
Representative Model18 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpinBruker Biospin
2data analysisSparkyGoddard
3structure solutionCYANAGuntert, Mumenthaler and Wuthrich
4refinementAmberCase, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm