2L3A

Solution NMR structure of homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae Northeast Structural Genomics Consortium Target SpR104 .


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
22D 1H-13C HSQC_CT1.2 mM [U-5% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
33D 1H-15N NOESY1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
43D 1H-13C NOESY1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
53D HNCO1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
63D HNCA1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
73D HNCACB1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
83D CBCA(CO)NH1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
93D HN(CO)CA1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
103D HBHA(CO)NH1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
113D H(CCO)NH1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
123D C(CO)NH1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
133D HCCH-TOCSY1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
143D HCCH-COSY1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
153D HCCH-TOCSY1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide100% D2O0.24.5ambient293
164D CC NOESY1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide100% D2O0.24.5ambient293
172D 1H-15N HSQC_swN150ppm1.2 mM [U-100% 13C; U-100% 15N] homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
183D edited/filtered 13C NOESY1.2 mM (1) [U-100% 13C; U-100% 15N]; (2) natural abundance homodimer protein SP_0782 (7-79) from Streptococcus pneumoniae, 20 mM ammonium acetate, 100 mM sodium chloride, 5 mM calcium chloride, 10 mM DTT, 0.02 % sodium azide90% H2O/10% D2O0.24.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE III850
NMR Refinement
MethodDetailsSoftware
simulated annealingCNSNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number150
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2008Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2collectionVNMR6.1CVarian
3collectionTopSpin2.1.4Bruker Biospin
4data analysisAutoStructure2.2.1Huang, Tejero, Powers and Montelione
5structure solutionX-PLOR NIH2.25Schwieters, Kuszewski, Tjandra and Clore
6refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
7data analysisSparky3.113Goddard
8refinementPSVS1.4Bhattacharya and Montelione
9chemical shift assignmentAutoAssign2.30Zimmerman, Moseley, Kulikowski and Montelione
10structure solutionPdbStat5.1(PdbStat)-Roberto Tejero and Gaetano T. Montelione
11autoassignmentPINE Server1.0Bahrami, A., Assadi, A., Markley, J. L. & Eghbalnia, H.
12structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich