2KZ4

Solution structure of protein SF1141 from Shigella flexneri 2a, Northeast structural genomics consortium (NESG) target SFT2


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
23D HNCA0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
33D CBCA(CO)NH0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
43D HBHA(CO)NH0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
53D HCCH-TOCSY0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
63D HCCH-TOCSY0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
73D 1H-15N NOESY0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
83D 1H-13C NOESY0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
93D 1H-13C_arom NOESY0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
102D 1H-15N HSQC (IPAP)0.5 mM [U-13C; U-15N] sf1141, 10 mM TRIS, 500 mM sodium chloride, 10 uM ZnSO4, 10 mM DTT, 0.01 % NaN3, 10 mM benzamidine, 10 % D2O90% H2O/10% D2O5007.7ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
restrained molecular dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2peak pickingSparkyGoddard
3chemical shift assignmentFMCLemak, Steren, Llinas, Arrowsmith
4data analysisTALOSCornilescu, Delaglio and Bax
5structure solutionCYANAGuntert, Mumenthaler and Wuthrich
6refinementCNSSOLVEBrunger, Adams, Clore, Gros, Nilges and Read