2KQ7

Solution structure of the Autophagy-Related Protein Atg8


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
22D 1H-13C HSQC20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
33D HNCO20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
43D HNCA20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
53D HNCACB20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
63D HNHA20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
73D HCCH-COSY20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
83D 1H-15N NOESY20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
93D 1H-13C NOESY20mM sodium phosphate-1, 150mM sodium chloride-2, 5mM DTT-3, 1mM EDTA-4, 0.05% sodium azide-5, 0.5mM [U-13C; U-15N] Atg8-693% H2O/7% D2O6.4ambient298
101D 1H20mM sodium phosphate-7, 150mM sodium chloride-8, 5mM DTT-9, 1mM EDTA-10, 0.05% sodium azide-11, 0.5mM [U-13C; U-15N] Atg8-12, 1mM DSS-1393% H2O/7% D2O6.4ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianVNMRS800
2VarianUnity_INOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsVnmrJ
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVnmrJVarian
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentCARAKeller
4structure solutionCYANAGuntert, Braun and Wuthrich
5refinementCYANAGuntert, Braun and Wuthrich