2KOM

Solution structure of humar Par-3b PDZ2 (residues 451-549)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY1 mM [U-100% 13C; U-100% 15N] hPar-3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 90 % H2O, 10 % D2O, 0.02 % sodium azide, 90% H2O, 10% D2O90% H2O/10% D2O536.5ambient298
23D_13C-separated_NOESY1 mM [U-100% 13C; U-100% 15N] hPar-3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 90 % H2O, 10 % D2O, 0.02 % sodium azide, 90% H2O, 10% D2O90% H2O/10% D2O536.5ambient298
33D_13C-separated_NOESY (AROMATIC)1 mM [U-100% 13C; U-100% 15N] hPar-3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 90 % H2O, 10 % D2O, 0.02 % sodium azide, 90% H2O, 10% D2O90% H2O/10% D2O536.5ambient298
43D HNCO1 mM [U-100% 13C; U-100% 15N] hPar-3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 90 % H2O, 10 % D2O, 0.02 % sodium azide, 90% H2O, 10% D2O90% H2O/10% D2O536.5ambient298
53D HNCA1 mM [U-100% 13C; U-100% 15N] hPar-3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 90 % H2O, 10 % D2O, 0.02 % sodium azide, 90% H2O, 10% D2O90% H2O/10% D2O536.5ambient298
63D HNCACB1 mM [U-100% 13C; U-100% 15N] hPar-3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 90 % H2O, 10 % D2O, 0.02 % sodium azide, 90% H2O, 10% D2O90% H2O/10% D2O536.5ambient298
73D HCCH-TOCSY1 mM [U-100% 13C; U-100% 15N] hPar-3 PDZ2, 20 mM sodium phosphate, 50 mM sodium chloride, 90 % H2O, 10 % D2O, 0.02 % sodium azide, 90% H2O, 10% D2O90% H2O/10% D2O536.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III500
NMR Refinement
MethodDetailsSoftware
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENTSTRUCTURES ARE BASED ON A TOTAL OF 1318 NOE CONSTRAINTS (351 INTRA, 296 SEQUENTIAL, 178 MEDIUM, AND 520 LONG RANGE) AND 99 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS.Xplor-NIH
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementXplor-NIH2.9.3SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M.
2collectionTopSpin2.1Bruker
3processingNMRPipe2007Delagio,F. et al.
4data analysisXEASY1.3Eccles, C., Guntert, P., Billeter, M., Wuthrich, K.
5data analysisGARANT2.1C. Bartels
6structural calculationCYANA2.1Guntert, P.