2KNR

Solution structure of protein Atu0922 from A. tumefaciens. Northeast Structural Genomics Consortium target AtT13. Ontario Center for Structural Proteomics target ATC0905


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
22D 1H-13C HSQC1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
33D HNCO1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
43D CBCA(CO)NH1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
53D HNCA1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
63D 1H-13C arom NOESY1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
73D 1H-15N NOESY1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
83D 1H-13C NOESY1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
93D HBHA(CO)NH1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
103D H(C)CH-TOCSY aliphatic1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
113D CCH-TOCSY aliphatic1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
122D 1H-13C HSQC CT1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
132D 1H-13C HSQC arom1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
142D HBCBCGCDHD1 mM [U-100% 13C; U-100% 15N] ATC0905, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 uM benzamidine, 1 x Roche inhibitor cocktail90% H2O/10% D2O7.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2VarianINOVA600
3BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsrestrained molecular dynamicsCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsAll 3D spectra were collected with non-uniform sampling and processed with MDDNMR.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
2structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
3processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4collectionTopSpinBruker Biospin
5collectionVnmrJVarian
6chemical shift assignmentABACUSLemak, A
7processingMddNMROrekhov, V. Yu.
8geometry optimizationTALOSCornilescu, Delaglio and Bax
9data analysisAnalysisCCPN
10peak pickingAnalysisCCPN