2KMC

Solution Structure of the N-terminal domain of kindlin-1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.4mM F0-1, 10% [U-100% 2H] D2O-2, 2mM DTT-3, 50mM sodium chloride-4, 20mM sodium phosphate-590% H2O/10% D2O506.5ambient298
22D 1H-13C HSQC0.4mM [U-100% 13C; U-100% 15N] F0-6, 10% [U-100% 2H] D2O-7, 2mM DTT-8, 50 mM sodium chloride-9, 20mM sodium phosphate-1090% H2O/10% D2O506.5ambient298
33D CBCA(CO)NH0.4mM [U-100% 13C; U-100% 15N] F0-6, 10% [U-100% 2H] D2O-7, 2mM DTT-8, 50 mM sodium chloride-9, 20mM sodium phosphate-1090% H2O/10% D2O506.5ambient298
43D HNCO0.4mM [U-100% 13C; U-100% 15N] F0-6, 10% [U-100% 2H] D2O-7, 2mM DTT-8, 50 mM sodium chloride-9, 20mM sodium phosphate-1090% H2O/10% D2O506.5ambient298
53D HNCA0.4mM [U-100% 13C; U-100% 15N] F0-6, 10% [U-100% 2H] D2O-7, 2mM DTT-8, 50 mM sodium chloride-9, 20mM sodium phosphate-1090% H2O/10% D2O506.5ambient298
63D HNCACB0.4mM [U-100% 13C; U-100% 15N] F0-6, 10% [U-100% 2H] D2O-7, 2mM DTT-8, 50 mM sodium chloride-9, 20mM sodium phosphate-1090% H2O/10% D2O506.5ambient298
73D HCCH-TOCSY0.4mM [U-100% 13C; U-100% 15N] F0-6, 10% [U-100% 2H] D2O-7, 2mM DTT-8, 50 mM sodium chloride-9, 20mM sodium phosphate-1090% H2O/10% D2O506.5ambient298
83D 1H-15N NOESY0.4mM F0-1, 10% [U-100% 2H] D2O-2, 2mM DTT-3, 50mM sodium chloride-4, 20mM sodium phosphate-590% H2O/10% D2O506.5ambient298
93D 1H-13C NOESY0.4mM [U-100% 13C; U-100% 15N] F0-6, 10% [U-100% 2H] D2O-7, 2mM DTT-8, 50 mM sodium chloride-9, 20mM sodium phosphate-1090% H2O/10% D2O506.5ambient298
102D 1H-1H NOESY0.4mM F0-11, 100% [U-100% 2H] D2O-12, 2mM DTT-13, 50mM sodium chloride-14, 20mM sodium phosphate-15100% D2O506.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
2BrukerDRX600
3BrukerDRX800
NMR Refinement
MethodDetailsSoftware
simulated annealing, molecular dynamics, torsion angle dynamicsFinal structures refined in explicit water bath as implemented in Aria 1.2/CNS 1.1. 20 Lowest energy structures selected from water refinement using CNS. Initial Structures generated with cyanaTopSpin
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.0Bruker Biospin
2processingTopSpin2.0Bruker Biospin
3structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
4chemical shift assignmentAnalysis1.0.15CCPN
5data analysisAnalysis1.0.15CCPN
6peak pickingAnalysis1.0.15CCPN
7refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
8refinementARIA1.2Linge, O'Donoghue and Nilges
9refinementCYANA2.1Guntert, Mumenthaler and Wuthrich