2KKX

Solution Structure of C-terminal domain of reduced NleG2-3 (residues 90-191) from Pathogenic E. coli O157:H7. Northeast Structural Genomics Consortium and Midwest Center for Structural Genomics target ET109A


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCO0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
23D CBCA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
33D HBHA(CO)NH0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
43D HNCA0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
53D HCCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
63D CCH-TOCSY0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
73D 1H-15N NOESY0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
83D 1H-13C NOESY0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
93D 1H-13C NOESY aromatic0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
102D 1H-13C HSQC0.5 mM [U-7% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
113D IPAP-J HNCO0.5 mM [U-100% 13C; U-100% 15N] NleG, 10 mM [U-100% 2H] TRIS, 300 mM sodium chloride, 10 mM DTT, 1 mM benzamidine, 0.01 % sodium azide90% H2O/10% D2O3007.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE800
NMR Refinement
MethodDetailsSoftware
simulated annealingNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.3Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2processingMDDGUI1.0Gutmanas and Arrowsmith
3data analysisSparky3.95Goddard
4peak pickingSparky3.95Goddard
5chemical shift assignmentFAWN1.0Lemak and Arrowsmith
6structure solutionCYANA2.1Guntert, Mumenthaler and Wuthrich
7refinementCNSBrunger, Adams, Clore, Gros, Nilges and Read
8nmr structure quality assessmentAutoStructureHuang, Tejero, Powers and Montelione
9nmr structure quality assessmentPSVSBhattacharya and Montelione