2KKP

Solution NMR structure of the phage integrase SAM-like Domain from Moth 1796 from Moorella thermoacetica. Northeast Structural Genomics Consortium Target MtR39K (residues 64-171).


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
22D 1H-13C HSQC0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
33D CBCA(CO)NH0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
43D C(CO)NH0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
53D HNCO0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
63D HNCA0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
73D HNCACB0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
83D HBHA(CO)NH0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
93D H(CCO)NH0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
103D HCCH-TOCSY0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
113D 1H-15N NOESY0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
123D 1H-13C NOESY0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-390% H2O/10% D2O0.26.5ambient293
134D 1H-13C NOESY.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM sodium chloride100% D2O0.26.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE850
NMR Refinement
MethodDetailsSoftware
simulated annealingOriginal NOE assgnments were done with CYANA. This NOE restraints list was refined using iterative cycles of XPLOR-NIH standalone, and XPLOR+HB and CNSw refinement.AutoAssign
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number150
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentAutoAssign2.3Zimmerman, Moseley, Kulikowski and Montelione
2processingNMRPipe2008Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3collectionVNMR6.1CVarian
4collectionTopSpin2.1.3Bruker Biospin
5structure solutionAutoStructure2.2.1Huang, Tejero, Powers and Montelione
6structure solutionX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
7refinementCNS1.2Brunger, Adams, Clore, Gros, Nilges and Read
8data analysisSparky3.113Goddard
9structure solutionPSVSBhattacharya and Montelione
10structure solutionPdbStat5.1Roberto Tejero and Gaetano T. Montelione
11structure solutionCYANAGuntert, Mumenthaler and Wuthrich