2KKP
Solution NMR structure of the phage integrase SAM-like Domain from Moth 1796 from Moorella thermoacetica. Northeast Structural Genomics Consortium Target MtR39K (residues 64-171).
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
2 | 2D 1H-13C HSQC | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
3 | 3D CBCA(CO)NH | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
4 | 3D C(CO)NH | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
5 | 3D HNCO | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
6 | 3D HNCA | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
7 | 3D HNCACB | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
8 | 3D HBHA(CO)NH | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
9 | 3D H(CCO)NH | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
10 | 3D HCCH-TOCSY | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
11 | 3D 1H-15N NOESY | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
12 | 3D 1H-13C NOESY | 0.9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM potassium chloride-3 | 90% H2O/10% D2O | 0.2 | 6.5 | ambient | 293 | |
13 | 4D 1H-13C NOESY | .9 mM [U-100% 13C; U-100% 15N] Moth_1796, 20 mM MES, 200 mM sodium chloride | 100% D2O | 0.2 | 6.5 | ambient | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 850 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | Original NOE assgnments were done with CYANA. This NOE restraints list was refined using iterative cycles of XPLOR-NIH standalone, and XPLOR+HB and CNSw refinement. | AutoAssign |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 150 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | AutoAssign | 2.3 | Zimmerman, Moseley, Kulikowski and Montelione |
2 | processing | NMRPipe | 2008 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | collection | VNMR | 6.1C | Varian |
4 | collection | TopSpin | 2.1.3 | Bruker Biospin |
5 | structure solution | AutoStructure | 2.2.1 | Huang, Tejero, Powers and Montelione |
6 | structure solution | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | refinement | CNS | 1.2 | Brunger, Adams, Clore, Gros, Nilges and Read |
8 | data analysis | Sparky | 3.113 | Goddard |
9 | structure solution | PSVS | Bhattacharya and Montelione | |
10 | structure solution | PdbStat | 5.1 | Roberto Tejero and Gaetano T. Montelione |
11 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich |