2KHE
Solution Structure of the Bacterial Toxin Rele from Thermus Thermophilus HB8
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.4mM [U-100% 13C; U-100% 15N] protein-1, 20mM [U-2H] d-Tris-HCl-2, 100mM sodium chloride-3, 5mM [U-2H] d-DTT-4 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
2 | 3D 1H-13C NOESY | 0.4mM [U-100% 13C; U-100% 15N] protein-1, 20mM [U-2H] d-Tris-HCl-2, 100mM sodium chloride-3, 5mM [U-2H] d-DTT-4 | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, simulated annealing | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker Biospin |
2 | processing | NMRPipe | 20060702 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | data analysis | NMRView | 5.0.4 | Johnson, One Moon Scientific |
4 | data analysis | KUJIRA | 0.9820 | Kobayashi, N. |
5 | collection | NMRPipe | 20060702 | Yokochi, M |
6 | data analysis | NMRPipe | 20060702 | Yokochi, M |
7 | chemical shift assignment | NMRPipe | 20060702 | Yokochi, M |
8 | structure solution | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
9 | collection | Sparky | Goddard | |
10 | data analysis | Sparky | Goddard | |
11 | chemical shift assignment | Sparky | Goddard | |
12 | structure solution | Sparky | Goddard | |
13 | refinement | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |