2KGP
Structural basis for stabilization of the tau pre-mRNA splicing regulatory element by Novantrone (Mitoxantrone)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.8~1.8 mM tau pre-mRNA splicing regulatory element-1 | 95% H2O/5% D2O | 10 | 6 | ambient | 277 | |
2 | 2D 1H-1H TOCSY | 0.8~1.8 mM tau pre-mRNA splicing regulatory element-2 | 100% D2O | 10 | 6 | ambient | 277 | |
3 | 2D 1H-1H NOESY | 0.8~1.8 mM tau pre-mRNA splicing regulatory element-2 | 100% D2O | 10 | 6 | ambient | 277 | |
4 | 2D 1H-1H TOCSY | 0.8 mM [U-99% 13C; U-99% 15N] tau pre-mRNA splicing regulatory element-3 | 100% D2O | 10 | 6 | ambient | 277 | |
5 | 2D 1H-1H NOESY | 0.8 mM [U-99% 13C; U-99% 15N] tau pre-mRNA splicing regulatory element-3 | 100% D2O | 10 | 6 | ambient | 277 | |
6 | 2D 1H-13C HSQC | 0.8~1.2 mM Partial deuterated nucleotides tau pre-mRNA splicing regulatory element-4 | 100% D2O | 10 | 6 | ambient | 277 | |
7 | 3D 1H-13C NOESY | 0.8~1.2 mM Partial deuterated nucleotides tau pre-mRNA splicing regulatory element-4 | 100% D2O | 10 | 6 | ambient | 277 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 500 |
3 | Varian | Uniform NMR System | 800 |
4 | Bruker | AVANCE | 750 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | Sparky | Goddard | |
3 | chemical shift calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
4 | refinement | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore |