2KDC

NMR Solution Structure of E. coli diacylglycerol kinase (DAGK) in DPC micelles


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D TROSY 1H-15N HSQC1.5 mM [U-100% 15N] DAGK90% H2O/10% D2O6.5ambient318
23D TROSY HNCO1.0 mM [U-13C; U-15N; U-2H] DAGK90% H2O/10% D2O6.5ambient318
33D TROSY HNCA1.0 mM [U-13C; U-15N; U-2H] DAGK90% H2O/10% D2O6.5ambient318
43D TROSY HN(CO)CA1.0 mM [U-13C; U-15N; U-2H] DAGK90% H2O/10% D2O6.5ambient318
53D TROSY CBCA(CO)NH1.0 mM [U-13C; U-15N; U-2H] DAGK90% H2O/10% D2O6.5ambient318
63D TROSY HNCACB1.0 mM [U-13C; U-15N; U-2H] DAGK90% H2O/10% D2O6.5ambient318
73D 1H-15N TROSY - NOESY1.0 mM [U-100% 13C; U-100% 15N; U-80% 2H] DAGK90% H2O/10% D2O6.5ambient318
82D TROSY 1H-15N HQSC1.4 mM [ U-15N; U-2H] DAGK90% H2O/10% D2O6.5ambient318
92D TROSY 1H-15N HQSC1.0 mM [U-100% 15N] DAGK90% H2O/10% D2O6.5ambient318
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingused refine.py from XPLOR-NIHX-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number48
Conformers Submitted Total Number16
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionX-PLOR NIH2.19Schwieters, Kuszewski, Tjandra and Clore
2refinementX-PLOR NIH2.19Schwieters, Kuszewski, Tjandra and Clore
3peak pickingNMRView5Johnson, One Moon Scientific
4data analysisNMRView5Johnson, One Moon Scientific
5chemical shift assignmentNMRView5Johnson, One Moon Scientific
6dihedral angle restraintsTALOSCornilescu, Delaglio and Bax
7data analysisSparkyGoddard
8data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
9data analysisProcheckNMRLaskowski and MacArthur