2KBP

Solution structure of a G-quadruplex of human telomeric RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H TOCSY1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
22D 1H-13C HSQC1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
32D 1H-1H COSY1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
42D 1H-1H NOESY1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
52D 1H-13C JR HMBC1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
62D 1H-1H JR NOESY1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
7H-D exchange1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
815N filtered1.25mM telomeric RNA-1, 70 mM potassium chloride-2, 20 mM potassium phosphate-3, 10 % D2O-490% H2O/10% D2O90 mM K+7.0ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
2BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
Distance geometry, simulated annealing, molecular dynamics constrained with NMR data (NOE, dihedral, hydrogen-bond constraints)X-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra, Clore
2structure solutionX-PLOR NIHSchwieters, Kuszewski, Tjandra, Clore