2K7E

NMR structure of the human tRNALys3 bound to the HIV genome Loop I


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H NOESY0.3 mM RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'), 0.3 mM T-RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3'), 10 mM sodium phosphate, 100 mM sodium chloride90% H2O/10% D2O0.16.5ambient276
22D 1H-1H NOESY0.3 mM RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'), 0.3 mM T-RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3'), 10 mM sodium phosphate, 100 mM sodium chloride90% H2O/10% D2O0.16.5ambient293
32D 1H-13C HSQC0.3 mM RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'), 0.3 mM T-RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3'), 10 mM sodium phosphate, 100 mM sodium chloride100% D2O0.16.5ambient293
42D DQF-COSY0.3 mM RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'), 0.3 mM T-RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3'), 10 mM sodium phosphate, 100 mM sodium chloride100% D2O0.16.5ambient293
52D 1H-1H NOESY0.3 mM RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'), 0.3 mM T-RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3'), 10 mM sodium phosphate, 100 mM sodium chloride100% D2O0.16.5ambient293
62D 1H-15N HSQC0.3 mM RNA (5'-R(*GP*CP*GP*GP*UP*GP*UP*AP*AP*AP*AP*G)-3'), 0.3 mM T-RNA (5'-R(*CP*UP*(SUR)P*UP*UP*AP*AP*(PSU)P*CP*UP*GP*C)-3'), 10 mM sodium phosphate, 100 mM sodium chloride90% H2O/10% D2O0.16.5ambient276
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
simulated annealingCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read
2chemical shift assignmentSparkyGoddard
3data analysisMOLMOLKoradi, Billeter and Wuthrich
4data analysisNMRDrawDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
5processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
6data analysisNMRViewJohnson, One Moon Scientific
7collectionXwinNMRBruker Biospin
8refinementCNS1.1Brunger, Adams, Clore, Gros, Nilges and Read