2JW4

NMR solution structure of the N-terminal SH3 domain of human Nckalpha


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-1H COSY1 mM Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
22D 1H-1H TOCSY1 mM Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
32D 1H-1H NOESY1 mM Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
42D 1H-1H NOESY1 mM Nckalpha-SH3.1,, 50 mM sodium phosphate, 100 % [U-100% 2H] D2O, 0.1 mM DSS100% D2O0.055.7ambient298
52D 1H-15N HSQC1 mM [U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
63D 1H-15N NOESY1 mM [U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
72D 1H-15N HSQC1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
83D HNCO1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
93D HNCA1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
103D CBCA(CO)NH1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
113D CBCANH1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
123D HBHA(CO)NH1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
133D HACANH1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 90 % H2O, 10 % [U-100% 2H] D2O, 0.1 mM DSS90% H2O/10% D2O0.055.7ambient298
142D 1H-13C HSQC1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 100 % [U-100% 2H] D2O, 0.1 mM DSS100% D2O0.055.7ambient298
153D 1H-13C NOESY1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 100 % [U-100% 2H] D2O, 0.1 mM DSS100% D2O0.055.7ambient298
163D HCCH-TOCSY1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 100 % [U-100% 2H] D2O, 0.1 mM DSS100% D2O0.055.7ambient298
173D HCCH-TOCSY1.2 mM [U-100% 13C; U-100% 15N] Nckalpha-SH3.1, 50 mM sodium phosphate, 100 % [U-100% 2H] D2O, 0.1 mM DSS100% D2O0.055.7ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (secondary structure criteria)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCYANAGuntert, Mumenthaler and Wuthrich
2collectionTopSpinBruker Biospin
3processingTopSpinBruker Biospin
4collectionXwinNMRBruker Biospin
5processingXwinNMRBruker Biospin
6structure analysisMOLMOLKoradi, Billeter and Wuthrich
7structure analysisProcheckNMRLaskowski and MacArthur
8data analysisSparkyGoddard
9chemical shift assignmentSparkyGoddard
10structure analysisPROMOTIF(PROMOTIF)-Hutchinson and Thornton
11refinementCYANAGuntert, Mumenthaler and Wuthrich