2JUN

Structure of the MID1 tandem B-boxes reveals an interaction reminiscent of intermolecular RING heterodimers


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.75-1.0 mM 15N & 15N/13C labeled protein in 50 mM Tris-HCl, 300 mM NaCl, 10 mM 2-mercaptoethanol, 5 mM ZnCl2, 2 % azide, and 0.015% Triton-X 100, pH 7.5, 90% H2O, 10% D2O90% H2O/10% D2O7.5ambient294
23D HNCA0.75-1.0 mM 15N & 15N/13C labeled protein in 50 mM Tris-HCl, 300 mM NaCl, 10 mM 2-mercaptoethanol, 5 mM ZnCl2, 2 % azide, and 0.015% Triton-X 100, pH 7.5, 90% H2O, 10% D2O90% H2O/10% D2O7.5ambient294
33D HNCACB0.75-1.0 mM 15N & 15N/13C labeled protein in 50 mM Tris-HCl, 300 mM NaCl, 10 mM 2-mercaptoethanol, 5 mM ZnCl2, 2 % azide, and 0.015% Triton-X 100, pH 7.5, 90% H2O, 10% D2O90% H2O/10% D2O7.5ambient294
43D 1H-15N NOESY0.75-1.0 mM 15N & 15N/13C labeled protein in 50 mM Tris-HCl, 300 mM NaCl, 10 mM 2-mercaptoethanol, 5 mM ZnCl2, 2 % azide, and 0.015% Triton-X 100, pH 7.5, 90% H2O, 10% D2O90% H2O/10% D2O7.5ambient294
53D 1H-13C NOESY0.75-1.0 mM 15N & 15N/13C labeled protein in 50 mM Tris-HCl, 300 mM NaCl, 10 mM 2-mercaptoethanol, 5 mM ZnCl2, 2 % azide, and 0.015% Triton-X 100, pH 7.5, 90% H2O, 10% D2O90% H2O/10% D2O7.5ambient294
63D HCCH-TOCSY0.75-1.0 mM 15N & 15N/13C labeled protein in 50 mM Tris-HCl, 300 mM NaCl, 10 mM 2-mercaptoethanol, 5 mM ZnCl2, 2 % azide, and 0.015% Triton-X 100, pH 7.5, 90% H2O, 10% D2O90% H2O/10% D2O7.5ambient294
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number200
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift calculationNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3chemical shift assignmentSparky3.110Goddard
4peak pickingSparky3.110Goddard
5data analysisTALOSCornilescu, Delaglio and Bax
6refinementCYANA2.1Guntert, Mumenthaler and Wuthrich