2JRP

Solution NMR Structure of YfgJ from Salmonella typhimurium Modeled with Two Zn+2 Bound, Northeast Structural Genomics Consortium Target StR86

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
2	2D 1H-13C HSQC	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
3	2D 1H-13C HSQC	1.7 mM [U-5% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
4	3D HNCO	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
5	3D CBCA(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
6	3D HNCACB	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
7	3D HBHA(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
8	3D HNHA	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
9	3D HCCH-TOCSY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
10	3D C(CO)NH	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
11	3D 1H-15N NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
12	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	95% H2O/5% D2O	100	4.5	ambient	293
13	3D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	100% D2O	100	4.5	ambient	293
14	3D aromatic 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	100% D2O	100	4.5	ambient	293
15	4D 1H-13C NOESY	1 mM [U-100% 13C; U-100% 15N] protein, 20 mM NH4OAc, 100 mM NaCl, 10 mM DTT, 5 mM CaCl2, 0.02 % NaN3	100% D2O	100	4.5	ambient	293

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Varian	INOVA	600
2	Varian	INOVA	750

NMR Refinement
Method	Details	Software
DGSA-distance geometry simulated annealing	DGSA using xplor NIH and then followed by cns water refinement.	CNS

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest bond energy
Conformers Calculated Total Number	25
Conformers Submitted Total Number	20
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	CNS	1.1	Brunger, Adams, Clore, Gros, Nilges and Read
2	structure solution	X-PLOR NIH	2.15.0	Schwieters, Kuszewski, Tjandra and Clore
3	data analysis	AutoStructure	2.1.1	Huang, Tejero, Powers and Montelione
4	peak picking	Sparky	3.1	Goddard
5	processing	NMRPipe	linux9	Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.