2JQL

NMR structure of the yeast Dun1 FHA domain in complex with a doubly phosphorylated (pT) peptide derived from Rad53 SCD1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-13C NOESY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 150 mM NaCl, 1 mM DTT100% D2O150 mM NaCl7.5ambient293
23D 1H-15N NOESY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM HEPES, 150 mM NaCl, 1 mM EDTA, 2 mM DTT90% H2O/10% D2O150 mM NaCl7.5ambient293
33D HNCA0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM HEPES, 150 mM NaCl, 1 mM EDTA, 2 mM DTT90% H2O/10% D2O150 mM NaCl7.5ambient293
43D HN(CO)CA0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM HEPES, 150 mM NaCl, 1 mM EDTA, 2 mM DTT90% H2O/10% D2O150 mM NaCl7.5ambient293
53D 13C/15N-filtered (f1),13C-edited (f3) NOESY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 1 mM DTT, 150 mM NaCl90% H2O/10% D2O150 mM NaCl7.5ambient293
63D 13C/15N-filtered (f1), 13C-edoted (f3) NOESY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 150 mM NaCl, 1 mM DTT100% D2O150 mM NaCl7.5ambient293
73D 13C-edited (f1), 13C/15N-filtered (f3) NOESY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 150 mM NaCl, 1 mM DTT100% D2O150 mM NaCl7.5ambient293
82D 13C/15N-filtered (f1,f2) NOESY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 1 mM DTT, 150 mM NaCl90% H2O/10% D2O150 mM NaCl7.5ambient293
92D 13C/15N-filtered (f1,f2) NOESY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 150 mM NaCl, 1 mM DTT100% D2O150 mM NaCl7.5ambient293
102D 13C/15N-filtered (f1,f2) TOCSY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 1 mM DTT, 150 mM NaCl90% H2O/10% D2O150 mM NaCl7.5ambient293
112D 13C/15N-filtered (f1,f2) TOCSY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 1 mM DTT, 150 mM NaCl90% H2O/10% D2O150 mM NaCl7.5ambient293
122D 13C/15N-filtered (f1,f2) COSY0.4 mM [U-13C; U-15N] protein, 0.5 mM peptide, 5 mM [U-2H] HEPES, 150 mM NaCl, 1 mM DTT100% D2O150 mM NaCl7.5ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE800
2BrukerDMX600
3BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealingNMRPipe
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, F. et al.
2data analysisNMRViewJohnson, B.A. et al.
3structure solutionCNSBrunger, A.T. et al.
4refinementCNSBrunger, A.T. et al.