2JCD

Structure of the N-oxygenase AurF from Streptomyces thioluteus


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.9658.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.222α = 90
b = 115.438β = 90
c = 125.801γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.1BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.11621000.0718.77.4529243
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.112.181000.285.37.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUTNONE2.11305025526451000.1980.1960.242RANDOM42.73
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.720.860.86
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.59
r_dihedral_angle_4_deg16.248
r_dihedral_angle_3_deg16.199
r_dihedral_angle_1_deg5.576
r_scangle_it3.559
r_scbond_it2.281
r_mcangle_it1.618
r_angle_refined_deg1.417
r_mcbond_it1.023
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.59
r_dihedral_angle_4_deg16.248
r_dihedral_angle_3_deg16.199
r_dihedral_angle_1_deg5.576
r_scangle_it3.559
r_scbond_it2.281
r_mcangle_it1.618
r_angle_refined_deg1.417
r_mcbond_it1.023
r_nbtor_refined0.302
r_symmetry_vdw_refined0.221
r_nbd_refined0.213
r_xyhbond_nbd_refined0.201
r_symmetry_hbond_refined0.164
r_chiral_restr0.101
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4975
Nucleic Acid Atoms
Solvent Atoms437
Heterogen Atoms32

Software

Software
Software NamePurpose
ARP/wARPmodel building
XDSdata reduction
SHELXphasing
SHARPphasing
PHASERphasing
ARP/wARPphasing
REFMACphasing
Cootphasing
REFMACrefinement