2IJY
NMR structure ensemble for the reduced DsbA disulphide oxidoreductase from Vibrio Cholerae
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 400 uM DsbA U-15N,13C, 10 mM HEPES, 50 mM sodium chloride, ph 6.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | 1 atm | 320 | |
2 | 3D_15N-separated_NOESY | 400 uM DsbA U-15N,13C, 10 mM HEPES, 50 mM sodium chloride, ph 6.8, 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 mM NaCl | 6.8 | 1 atm | 320 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Varian | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics | 898 long range NOE restraints, 850 medium range NOE restraints, 95 ambiguous NOE restraints, 95 hydrogen bond distance restraints, 238 dihedral angle restraints | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with acceptable covalent geometry,structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 22 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | Structure determined using triple resonance methods. Stereospecific assignments of valine and leucine methyls were achieved using a 10% 13C-labeled sample of DsbA |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | ||
2 | collection | VNMR | ||
3 | processing | NMRPipe | ||
4 | data analysis | Sparky | ||
5 | structure solution | CYANA | 2.1 | |
6 | refinement | X-PLOR |