2IDA
Solution NMR Structure of Protein RPA1320 from Rhodopseudomonas Palustris. Northeast Structural Genomics Consortium Target RpT3; Ontario Center for Structural Proteomics Target RP1313.
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.6mM RPA1320, U-15N,13C: 10mM Tris, 250mM NaCl, 1mM Benzamidine, 10 mM DTT, 10 mM ZnSO4, 0.012 NaN3, 95% H2O, 5% D2O | 95% H2O/5% D2O | 250 mM NaCl | 7.3 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 0.6mM RPA1320, U-15N,13C: 10mM Tris, 250mM NaCl, 1mM Benzamidine, 10 mM DTT, 10 mM ZnSO4, 0.012 NaN3, 95% H2O, 5% D2O | 95% H2O/5% D2O | 250 mM NaCl | 7.3 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 500 |
2 | Bruker | AVANCE | 600 |
3 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics, simulated annealing | The structures are based on 2123 NOE-derived distance constraints, 89 dihedral angle restraints, and 14 Hydrogen bonds restraints | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
---|---|
Details | ICP AES assay suggested 2.3 Zinc atoms per protein molecule |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.3 | Delaglio, F. |
2 | structure solution | CYANA | 2.1 | Guntert, P. |
3 | refinement | CNS | 1.1 | Brunger, A.T. |