2IC6

The Coiled-coil Domain (residues 1-75) Structure of the Sin Nombre Virus Nucleocapsid Protein


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62930.2 M ammonium acetate, 0.1 M sodium acetate, 30% polyethylene glycol (PEG) 4000, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0138.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 28.116α = 90
b = 49.521β = 90
c = 100.554γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315Bent conical Si-mirror (Rh coating)2005-10-30MSINGLE WAVELENGTH
21x-ray100CCDMARMOSAIC 300 mm CCDAdjustable focusing mirrors in K-B geometry2005-12-15MMAD
31
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-C0.9002APS14-BM-C
2SYNCHROTRONAPS BEAMLINE 23-ID-D0.97964, 0.97948, 0.95373APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,21.151099.90.0510.05127.45.85080350773229
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.151.1799.80.2380.2386.64.32516

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.15105069450689257299.860.1560.1560.1540.177RANDOM10.85
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.561.11-1.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.279
r_dihedral_angle_4_deg19.452
r_dihedral_angle_3_deg13.409
r_sphericity_free11.281
r_scangle_it6.378
r_sphericity_bonded5.689
r_scbond_it4.655
r_dihedral_angle_1_deg3.096
r_mcangle_it2.892
r_mcbond_it2.658
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.279
r_dihedral_angle_4_deg19.452
r_dihedral_angle_3_deg13.409
r_sphericity_free11.281
r_scangle_it6.378
r_sphericity_bonded5.689
r_scbond_it4.655
r_dihedral_angle_1_deg3.096
r_mcangle_it2.892
r_mcbond_it2.658
r_rigid_bond_restr2.347
r_angle_refined_deg1.884
r_angle_other_deg1.221
r_mcbond_other0.973
r_symmetry_vdw_other0.292
r_nbd_refined0.265
r_symmetry_vdw_refined0.254
r_chiral_restr0.222
r_symmetry_hbond_refined0.208
r_nbd_other0.2
r_nbtor_refined0.177
r_xyhbond_nbd_refined0.172
r_nbtor_other0.095
r_bond_refined_d0.021
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1184
Nucleic Acid Atoms
Solvent Atoms245
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction