2HNS
Structure of the AAGU tetraloop
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1mM RNA, 10mM phosphate buffer pH 6.4, 90% H2O, 10% D2O | 90% H2O/10% D2O | 10mM sodium phosphate | 6.4 | ambient | 288 | |
2 | 2D NOESY | 1mM RNA; 10mM phosphate buffer pH 6.4 | 100% D2O | 10mM sodium phosphate | 6.4 | ambient | 303 | |
3 | 2D TOCSY | 1mM RNA; 10mM phosphate buffer pH 6.4 | 100% D2O | 10mM sodium phosphate | 6.4 | ambient | 303 | |
4 | DQF-COSY | 1mM RNA; 10mM phosphate buffer pH 6.4 | 100% D2O | 10mM sodium phosphate | 6.4 | ambient | 303 | |
5 | 2D HMQC | 1mM RNA A-15N,13C; 10mM phosphate buffer pH 6.4 | 100% D2O | 10mM sodium phosphate | 6.4 | ambient | 303 | |
6 | 3D HCCH-TOCSY | 1mM RNA A-15N,13C; 10mM phosphate buffer pH 6.4 | 100% D2O | 10mM sodium phosphate | 6.4 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 800 |
2 | Bruker | DRX | 600 |
3 | Varian | INOVA | 500 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.1 | |
2 | data analysis | Gifa | 4.0 | M.A. DELSUC |
3 | data analysis | Sparky | 3.110 | |
4 | structure solution | CNS | 1.1 | BRUNGER A |
5 | refinement | CNS | 1.1 | BRUNGER A |