2HLJ

CRYSTAL STRUCTURE OF A PUTATIVE THIOESTERASE (KT2440) FROM PSEUDOMONAS PUTIDA KT2440 AT 2.00 A RESOLUTION


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP, NANODROP6.92770.2M K2NO3, 20.0% PEG-3350, No Buffer, pH 6.9, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.2144

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 53.809α = 90
b = 73.613β = 90
c = 39.752γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCDFlat collimating mirror, toroid focusing mirror2006-06-18MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-20.97934, 0.97915, 0.91837SSRLBL9-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1229.32399.90.0850.0856.73.61118120.2
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.051000.2870.2872.63.6785

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT229.3231115453199.860.170.1670.227RANDOM21.701
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.32-1.853.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.235
r_dihedral_angle_4_deg13.386
r_dihedral_angle_3_deg12.036
r_scangle_it6.709
r_dihedral_angle_1_deg6.354
r_scbond_it5.22
r_mcangle_it3.021
r_mcbond_it2.219
r_angle_refined_deg1.447
r_angle_other_deg0.856
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.235
r_dihedral_angle_4_deg13.386
r_dihedral_angle_3_deg12.036
r_scangle_it6.709
r_dihedral_angle_1_deg6.354
r_scbond_it5.22
r_mcangle_it3.021
r_mcbond_it2.219
r_angle_refined_deg1.447
r_angle_other_deg0.856
r_mcbond_other0.524
r_symmetry_vdw_other0.287
r_symmetry_vdw_refined0.226
r_symmetry_hbond_refined0.22
r_nbd_refined0.211
r_nbd_other0.182
r_nbtor_refined0.175
r_xyhbond_nbd_refined0.154
r_chiral_restr0.091
r_nbtor_other0.085
r_bond_refined_d0.014
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1224
Nucleic Acid Atoms
Solvent Atoms170
Heterogen Atoms6

Software

Software
Software NamePurpose
MolProbitymodel building
REFMACrefinement
SCALAdata scaling
PDB_EXTRACTdata extraction
MOSFLMdata reduction
CCP4data scaling
SOLVEphasing