X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
13.527760% (v/v) MPD, Hepes 15 mM pH 7.0, 1 mM Ac2Cu, Counter-diffusion, temperature 277K, pH 3.50
Crystal Properties
Matthews coefficientSolvent content
2.6353.34

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.507α = 90
b = 103.507β = 90
c = 41.396γ = 120
Symmetry
Space GroupP 61

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMAR CCD 165 mm2005-02-02MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM16ESRFBM16

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2540990.05925.827.11229047.21
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.2995.50.3523.696.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2TRX2.25401212858699.10.2270.2270.2250.268RANDOM42.84
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-4.981-2.491-4.9817.472
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.288
r_dihedral_angle_4_deg24.163
r_dihedral_angle_3_deg15.364
r_dihedral_angle_1_deg6.425
r_scangle_it2.616
r_scbond_it1.929
r_angle_refined_deg1.518
r_mcangle_it0.975
r_mcbond_it0.537
r_xyhbond_nbd_refined0.452
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.288
r_dihedral_angle_4_deg24.163
r_dihedral_angle_3_deg15.364
r_dihedral_angle_1_deg6.425
r_scangle_it2.616
r_scbond_it1.929
r_angle_refined_deg1.518
r_mcangle_it0.975
r_mcbond_it0.537
r_xyhbond_nbd_refined0.452
r_nbtor_refined0.3
r_nbd_refined0.212
r_symmetry_hbond_refined0.198
r_symmetry_vdw_refined0.184
r_chiral_restr0.091
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1626
Nucleic Acid Atoms
Solvent Atoms80
Heterogen Atoms24

Software

Software
Software NamePurpose
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
HKL-2000data scaling
Cootmodel building
MolProbitymodel building