2GPF
Solution NMR Structure of Protein PA22412 from Pseudomonas aeruginosa. Northeast Structural Genomics Consortium Target PaT86, Ontario Centre for Structural Proteomics Target PA2412.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.6mM pa2412, U-15N,13C, 450 mM NaCl, 10 mM MOPS, 1 mM Benzamidine, 10 mM DTT, 10 mM ZnSO4, 0.01% NAN3, 95% H2O, 5% D2O | 95% H2O/5% D2O | 450 mM NaCl | 6.5 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 0.6mM pa2412, U-15N,13C, 450 mM NaCl, 10 mM MOPS, 1 mM Benzamidine, 10 mM DTT, 10 mM ZnSO4, 0.01% NAN3, 95% H2O, 5% D2O | 95% H2O/5% D2O | 450 mM NaCl | 6.5 | ambient | 298 | |
3 | J modulated HSQC for RDC | 0.6mM pa2412, U-15N,13C, 450 mM NaCl, 10 mM MOPS, 1 mM Benzamidine, 10 mM DTT, 10 mM ZnSO4, 0.01% NAN3, 95% H2O, 5% D2O | 95% H2O/5% D2O | 450 mM NaCl | 6.5 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 600 |
2 | Bruker | AVANCE | 500 |
NMR Refinement | ||
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Method | Details | Software |
molecular dynamics, simulated annealing | 1483 NOE-derived distances constraints, 78 dihedral angle restraints, 40 RDC restraints | NMRPipe |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 2.3 | Delaglio, F. |
2 | data analysis | Sparky | 3.1 | Goddard, T.D. |
3 | structure solution | CNS | 1.1 | Brunger, A.T. |
4 | refinement | CNS | 1.1 | Brunger, A.T. |