2FW5

Diheme cytochrome c from Rhodobacter sphaeroides


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.529125-30% PEG 8000, 0.1M MnSO4, 0.1M sodium cacodylate buffer pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.3146.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 93.025α = 90
b = 45.193β = 105.87
c = 34.357γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42002-05-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX14.11.488SRSPX14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
122497.60.06910.894009175
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.07870.1694.05803

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2FWT224873843797.630.172750.17090.21024RANDOM24.486
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.940.92-1.93-0.5
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.211
r_scangle_it5.171
r_scbond_it3.58
r_mcangle_it2.175
r_angle_refined_deg1.939
r_mcbond_it1.266
r_symmetry_vdw_refined0.298
r_nbd_refined0.289
r_xyhbond_nbd_refined0.162
r_symmetry_hbond_refined0.154
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.211
r_scangle_it5.171
r_scbond_it3.58
r_mcangle_it2.175
r_angle_refined_deg1.939
r_mcbond_it1.266
r_symmetry_vdw_refined0.298
r_nbd_refined0.289
r_xyhbond_nbd_refined0.162
r_symmetry_hbond_refined0.154
r_chiral_restr0.137
r_metal_ion_refined0.058
r_bond_refined_d0.021
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms916
Nucleic Acid Atoms
Solvent Atoms92
Heterogen Atoms86

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing