2FI2

Solution structure of the SCAN homodimer from MZF-1/ZNF42


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY2 mM ZNF-42 U-15N/13C, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O99 mM7.4AMBIENT298
23D_13C-separated_NOESY2 mM ZNF-42 U-15N/13C, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O99 mM7.4AMBIENT298
33D_13C-separated_NOESY (AROMATIC)2 mM ZNF-42 U-15N/13C, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O99 mM7.4AMBIENT298
43D_13C-F1-filtered-13C-F3-separated_NOESY1.7 mM ZNF-42 U-15N/13C, 1.7 mM unlabeled ZNF-42, 20 mM sodium phosphate, 50 mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O99 mM7.4AMBIENT298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX600
NMR Refinement
MethodDetailsSoftware
AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT ASSIGNMENT AND ITERATIVE NOE REFINEMENT. FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS IN EXPLICIT SOLVENTHOMODIMER STRUCTURES ARE BASED ON A TOTAL OF 4063 NOE CONSTRAINTS ( 843 INTRA, 818 SEQUENTIAL, 1029 MEDIUM, 750 INTRAMONOMER LONG RANGE AND 623 INTERMONOMER NOE CONSTRAINTS) AND 264 PHI AND PSI DIHEDRAL ANGLE CONSTRAINTS. CONSTRAINTS WERE ASSIGNED AND VALIDATED IN ONE MONOMER AND THEN DUPLICATED TO GENERATE A SYMMETRY RELATED CONSTRAINTS IN THE SECOND MONOMER. CONSTRAINT TOTALS LISTED ABOVE INCLUDE CONSTRAINTS FROM BOTH MONOMERS.XPLOR-NIH
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsALL TRIPLE-RESONANCE AND NOESY SPECTRA WERE ACQUIRED USING A CRYOGENIC PROBE
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementXPLOR-NIH2.9.3.SCHWIETERS, C.D., KUSZEWSKI, J.J., TJANDRA, N., CLORE, G.M.
2collectionXwinNMR3.5
3processingNMRPipe2004
4data analysisSPSCAN1.1.0
5data analysisXEASY1.3
6data analysisGARANT2.1
7structure solutionCYANA2.1