2F33

NMR solution structure of Ca2+-loaded calbindin D28K


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
14D_13C/15N-separated_NOESY1mM calbindin D28k; U-15N,13C; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2, 90% H2O, 10% D2O90% H2O/10% D2O6 mM CaCl26.2ambient323
24D_13C/13C-separated_NOESY1mM calbindin D28k; U-15N,13C; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2100% D2O6 mM CaCl26.2ambient323
33D_CT_13C_methyl-separated_NOESY1mM calbindin D28k; U-2H,15N,13C; Ile (d1 only), Leu, Val methyl protonated; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2, 90% H2O, 10% D2O90% H2O/10% D2O6 mM CaCl27.0ambient298
4(4,2)D_CT_13C/13C_methyl-separated_NOESY1mM calbindin D28k; U-2H,15N,13C; Ile (d1 only), Leu, Val methyl protonated; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2, 90% H2O, 10% D2O90% H2O/10% D2O6 mM CaCl26.2ambient323
54D_13C/15N-separated_NOESY1mM calbindin D28k; U-2H,15N,13C; Ile (d1 only), Leu, Val methyl protonated; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2, 90% H2O, 10% D2O90% H2O/10% D2O6 mM CaCl27.0ambient298
6(4,2)D_13C/15N-separated_NOESY1mM calbindin D28k; U-2H,15N,13C; Ile (d1 only), Leu, Val methyl protonated; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2, 90% H2O, 10% D2O90% H2O/10% D2O6 mM CaCl26.2ambient323
74D_15N/15N-separated_NOESY1mM calbindin D28k; U-2H,15N; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2, 90% H2O, 10% D2O90% H2O/10% D2O6 mM CaCl27.0ambient298
8(4,2)D_13C_ali/13C_aro-separated_NOESY1mM calbindin D28k; U-15N,13C; 10 mM Tris, 1 mM DTT, 0.02% NaN3, 6 mM CaCl2, 90% H2O, 10% D2O90% H2O/10% D2O6 mM CaCl26.2ambient323
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA800
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics molecular dynamics simulated annealingthe structures are based on 6882 NOE distance constraints, 432 dihedral angle restraints, 36 hydrogen bond restraints and 304 residual dipolar coupling restraintsCNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number900
Conformers Submitted Total Number10
Representative Model1 (fewest violations,lowest energy)
Additional NMR Experimental Information
DetailsThis structure was determined using a combination of 3D, 4D and (4,2)D projection reconstruction techniques on perdeuterated and fully protonated samples.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCNS1.0Brunger, A.T., Adams, P.D., Clore, G.M., Delano, W.L., Gros, P., Grosse-Kunstleve, R.W., Jiang, J.-S., Kuszewski, J., Nilges, M., Pannu, N.S., Read, R.J., Rice, L.M., Simonson, T., Warren, G.L.
2processingNMRPipe2.3Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
3data analysisNMRView5.0Johnson, B.A., Blevins, R.A.