2EJY

Solution structure of the p55 PDZ T85C domain complexed with the glycophorin C F127C peptide


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_15N-separated_NOESY0.6mM p55 PDZ domain-GPC peptide complex (PDZ U-15N, peptide NA); 22.5mM sodium phosphate, 45mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O45 mM6.8ambient298
23D_13C-separated_NOESY1.2mM p55 PDZ domain-GPC peptide complex (PDZ U-13C, 15N, peptide NA); 22.5mM sodium phosphate, 45mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O45 mM6.8ambient298
32D F2_13C_filtered_NOESY1.2mM p55 PDZ domain-GPC peptide complex (PDZ U-13C, 15N, peptide NA); 22.5mM sodium phosphate, 45mM NaCl100% D2O45 mM6.8ambient298
42D F1F2_13C_filtered_NOESY1.2mM p55 PDZ domain-GPC peptide complex (PDZ U-13C, 15N, peptide NA); 22.5mM sodium phosphate, 45mM NaCl100% D2O45 mM6.8ambient298
53D_15N-separated_NOESY0.6mM p55 PDZ domain-GPC peptide complex (peptide U-15N, PDZ NA); 22.5mM sodium phosphate, 45mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O45 mM6.8ambient298
63D_13C-separated_NOESY0.9mM p55 PDZ domain-GPC peptide complex (peptide U-13C, 15N, PDZ NA); 22.5mM sodium phosphate, 45mM NaCl, 90% H2O, 10% D2O90% H2O/10% D2O45 mM6.8ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE II700
NMR Refinement
MethodDetailsSoftware
simulated annealingthe structures are based on a total of 1491 restraints, 1291 are NOE-derived distance constraints, 130 dihedral angle restraints, 70 distance restraints from hydrogen bonds.CNS
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsThe structure was determined using triple-resonance NMR spectroscopy.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionCNS1.1Brunger, A.T.
2refinementCNS1.1Brunger, A.T.