X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.62931.5M ammonium sulfate, 0.1M sodium acetate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.8957.39

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.855α = 90
b = 125.745β = 106.56
c = 163.62γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDSBC-32005-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM0.97898APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.458098.80.08322.44.46979469794-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.52.5498.70.5092.44.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.458069734369198.290.207240.206120.22844RANDOM40.881
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.442.7-1.931.03
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.148
r_dihedral_angle_3_deg17.924
r_dihedral_angle_4_deg13.404
r_scangle_it8.477
r_dihedral_angle_1_deg6.572
r_scbond_it5.964
r_mcangle_it4.117
r_mcbond_it2.852
r_angle_refined_deg1.729
r_angle_other_deg0.952
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg43.148
r_dihedral_angle_3_deg17.924
r_dihedral_angle_4_deg13.404
r_scangle_it8.477
r_dihedral_angle_1_deg6.572
r_scbond_it5.964
r_mcangle_it4.117
r_mcbond_it2.852
r_angle_refined_deg1.729
r_angle_other_deg0.952
r_mcbond_other0.434
r_symmetry_hbond_refined0.262
r_nbd_refined0.258
r_symmetry_vdw_refined0.239
r_nbd_other0.208
r_nbtor_refined0.196
r_xyhbond_nbd_refined0.187
r_symmetry_vdw_other0.187
r_chiral_restr0.098
r_nbtor_other0.091
r_xyhbond_nbd_other0.057
r_bond_refined_d0.021
r_gen_planes_refined0.007
r_gen_planes_other0.003
r_bond_other_d0.002
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10830
Nucleic Acid Atoms
Solvent Atoms211
Heterogen Atoms36

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling
HKL-3000phasing
SHELXDphasing
SHELXEmodel building
MLPHAREphasing
DMphasing
SOLVEphasing
RESOLVEphasing
Omodel building
Cootmodel building
CCP4phasing