2D3A

Crystal Structure of the Maize Glutamine Synthetase complexed with ADP and Methionine sulfoximine Phosphate


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.82989% PEG8000, 5% MPD, 100MM Tris-HCl, 10MM MnCl2, 1MM ATP, 1MM L-Methionine sulfoximine , pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.753.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 95.795α = 90
b = 191.041β = 101.47
c = 118.103γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 3152004-04-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-5A1.0Photon FactoryBL-5A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.635087.10.06415.823.110742067.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.632.7265.30.3852.082.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT2.6326.13101590540086.850.185930.184120.2195RANDOM66.219
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.152
r_dihedral_angle_3_deg19.35
r_dihedral_angle_4_deg18.573
r_dihedral_angle_1_deg6.556
r_scangle_it2.928
r_scbond_it1.693
r_angle_refined_deg1.669
r_mcangle_it1.306
r_mcbond_it0.731
r_symmetry_vdw_refined0.422
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.152
r_dihedral_angle_3_deg19.35
r_dihedral_angle_4_deg18.573
r_dihedral_angle_1_deg6.556
r_scangle_it2.928
r_scbond_it1.693
r_angle_refined_deg1.669
r_mcangle_it1.306
r_mcbond_it0.731
r_symmetry_vdw_refined0.422
r_nbtor_refined0.32
r_nbd_refined0.232
r_symmetry_hbond_refined0.214
r_xyhbond_nbd_refined0.172
r_chiral_restr0.113
r_bond_refined_d0.016
r_metal_ion_refined0.011
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms27450
Nucleic Acid Atoms
Solvent Atoms721
Heterogen Atoms450

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing