X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1515-30% PEG400 (W TO V), 200 MM K/PHOSPHATE, PH 4-5.5
Crystal Properties
Matthews coefficientSolvent content
3.160.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 133.663α = 90
b = 133.663β = 90
c = 192.156γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray93IMAGE PLATEMARRESEARCH RAXIS IVOSMIC CONFOCAL MAXFLUX OPTICSMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU200B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.5401000.0642.819.621895
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.571000.3210.619.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT2.599.012189511851000.2060.2030.262RANDOM32.15
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.670.330.67-1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.069
r_dihedral_angle_4_deg18.377
r_dihedral_angle_3_deg16.469
r_dihedral_angle_1_deg6.33
r_scangle_it2.836
r_scbond_it1.791
r_angle_refined_deg1.487
r_mcangle_it1.055
r_mcbond_it0.608
r_nbtor_refined0.315
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.069
r_dihedral_angle_4_deg18.377
r_dihedral_angle_3_deg16.469
r_dihedral_angle_1_deg6.33
r_scangle_it2.836
r_scbond_it1.791
r_angle_refined_deg1.487
r_mcangle_it1.055
r_mcbond_it0.608
r_nbtor_refined0.315
r_nbd_refined0.201
r_symmetry_vdw_refined0.19
r_xyhbond_nbd_refined0.159
r_symmetry_hbond_refined0.146
r_chiral_restr0.098
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3606
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms168

Software

Software
Software NamePurpose
CCP4model building
CCP4data scaling
SOLVEphasing
RESOLVEphasing
AMoREphasing
CCP4phasing
REFMACrefinement