X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.52930.2M Sodium acetate, 0.1M Tris-HCl, 30% PEG4000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9135.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 32.3α = 90
b = 52.43β = 102.72
c = 52.92γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-03-14MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-30.931ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.820950.06914.493864038640
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.9197.389.70.4653.04

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.819.7415752157527881000.1910.1910.1880.254RANDOM18.909
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.990.89-0.16-0.44
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.981
r_dihedral_angle_3_deg12.542
r_dihedral_angle_1_deg5.832
r_scangle_it3.401
r_scbond_it2.115
r_mcangle_it1.341
r_angle_refined_deg1.298
r_mcbond_it0.814
r_nbtor_refined0.303
r_symmetry_vdw_refined0.212
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.981
r_dihedral_angle_3_deg12.542
r_dihedral_angle_1_deg5.832
r_scangle_it3.401
r_scbond_it2.115
r_mcangle_it1.341
r_angle_refined_deg1.298
r_mcbond_it0.814
r_nbtor_refined0.303
r_symmetry_vdw_refined0.212
r_nbd_refined0.206
r_symmetry_hbond_refined0.194
r_xyhbond_nbd_refined0.138
r_chiral_restr0.085
r_bond_refined_d0.012
r_gen_planes_refined0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1321
Nucleic Acid Atoms
Solvent Atoms222
Heterogen Atoms21

Software

Software
Software NamePurpose
XSCALEdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
ProDCdata collection
XDSdata scaling