SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY3.3 mM Class I aptamer U-15N, 13C; 3.63 mM GTP ligand NA; 10 % phosphate buffer NA, 95% H2O, 5% D2O95% H2O/5% D2O5 mM MgCl2, 75 mM KCl6.1ambient288
23D_15N-separated_NOESY3.3 mM Class I aptamer U-15N, 13C; 3.63 mM GTP ligand NA; 10 % phosphate buffer NA, 95% H2O, 5% D2O95% H2O/5% D2O5 mM MgCl2, 75 mM KCl6.1ambient288
32D NOESY3.3 mM Class I aptamer U-15N, 13C; 3.63 mM GTP ligand NA; 10 % phosphate buffer NA, 95% H2O, 5% D2O95% H2O/5% D2O5 mM MgCl2, 75 mM KCl6.1ambient288
4DQF-COSY0.9 mM Class I aptamer NA; 0.99 nM GTP ligand U-15N, 13C; 10 % phospate buffer NA, 95% H2O, 5% D2O95% H2O/5% D2O5 mM MgCl2, 75 mM KCl6.1ambient288
52D 1H decoupled 13C-1H CT HSQC0.8 mM Class I RNA aptamer U-15N,13C, 0.9 mM GTP NA, 10% phosphate buffer NA, 95% H2O, 5% D2O95% H2O/5% D2O5 mM MgCl2, 75 mM KCl6.8ambient303
62D 13C-1H CT-TROSY0.8 mM Class I RNA aptamer U-15N,13C, 0.9 mM GTP NA, 10% phosphate buffer NA, 95% H2O, 5% D2O95% H2O/5% D2O5 mM MgCl2, 75 mM KCl6.8ambient303
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA750
2VarianINOVA500
3VarianUNITY400
4BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
restrained molecular dynamicsstructures are based on a total of 434 restraintsNMRPipe
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number1
Representative Model1 (minimized average structure)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.3Delaglio
2structure solutionXPLOR-NIH2.9.2Clore, Tjandra, Schwieters, Kuszewski
3data analysisSparky3Kneller and Kuntz
4refinementXPLOR-NIH2.9.2Clore, Tjandra, Schwieters, Kuszewski