X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5293PEG 5000, Mes/KOH, (NH4)2 SO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.953

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 49.22α = 90
b = 64.8β = 90
c = 129.712γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4mirror2003-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.9393ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.13097.30.0661752429524295
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1882.40.3834.72005

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1SAU2.128.992308523085116597.080.20360.203630.202230.23062RANDOM37.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.741.53-0.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.267
r_dihedral_angle_3_deg16.11
r_dihedral_angle_4_deg15.966
r_dihedral_angle_1_deg5.52
r_scangle_it2.833
r_scbond_it1.787
r_angle_refined_deg1.313
r_mcangle_it1.114
r_mcbond_it0.735
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.267
r_dihedral_angle_3_deg16.11
r_dihedral_angle_4_deg15.966
r_dihedral_angle_1_deg5.52
r_scangle_it2.833
r_scbond_it1.787
r_angle_refined_deg1.313
r_mcangle_it1.114
r_mcbond_it0.735
r_nbtor_refined0.309
r_symmetry_hbond_refined0.208
r_nbd_refined0.197
r_symmetry_vdw_refined0.193
r_xyhbond_nbd_refined0.151
r_chiral_restr0.092
r_bond_refined_d0.012
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2823
Nucleic Acid Atoms
Solvent Atoms186
Heterogen Atoms20

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
EPMRphasing