1ZU2

Solution NMR structure of the plant Tom20 mitochondrial import receptor from Arabidopsis thaliana


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1mM Tom20 U-15N,13C, 20mM sodium phosphate buffer, 150mM sodium chloride, 0.02 %(w/v) sodium azide, 1mM dithiothreitol, 1mM EDTA, 3mM phenylmethylsulphonylfluoride, 90 % H2O, 10 % D2O90% H2O/10% D2O150mM sodium chloride7.4ambient298
23D_15N-separated_NOESY1mM Tom20 U-15N, 20mM sodium phosphate buffer, 150mM sodium chloride, 0.02 %(w/v) sodium azide, 1mM dithiothreitol, 1mM EDTA, 3mM phenylmethylsulphonylfluoride, 90 % H2O, 10 % D2O90% H2O/10% D2O150mM sodium chloride7.4ambient298
3HNHA1mM Tom20 U-15N, 20mM sodium phosphate buffer, 150mM sodium chloride, 0.02 %(w/v) sodium azide, 1mM dithiothreitol, 1mM EDTA, 3mM phenylmethylsulphonylfluoride, 90 % H2O, 10 % D2O90% H2O/10% D2O150mM sodium chloride7.4ambient298
43D-13C-separated_NOESY (aromatics)1mM Tom20 U-15N,13C, 20mM sodium phosphate buffer, 150mM sodium chloride, 0.02 %(w/v) sodium azide, 1mM dithiothreitol, 1mM EDTA, 3mM phenylmethylsulphonylfluoride95 % D2O150mM sodium chloride7.4ambient298
53D_13C-separated_NOESY1mM Tom20 U-15N,13C, 20mM sodium phosphate buffer, 150mM sodium chloride, 0.02 %(w/v) sodium azide, 1mM dithiothreitol, 1mM EDTA, 3mM phenylmethylsulphonylfluoride95 % D2O150mM sodium chloride7.4ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianINOVA500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsThe CANDID software was used for initial automatic NOE assignment. Structures are based on 1629 NOE-derived upper distance constraints (47 intra residue), 136 distance restraints from hydrogen bonds, refinement against 129 J(HNHA) coupling constants and 234 PHI/PSI dihedral angle constraints from TALOS.VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Additional NMR Experimental Information
DetailsStructure contains 5 non-native residues at the N-terminus (from fusion system protease site) and 8 non-native residues at the C-terminus from a polyhistidine tag.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR4.1cVarian Inc.
2processingNMRPipe1.1Delaglio, F.
3data analysisSparky3.111Goddard, T.D & Kneller, D.G.
4structure solutionCYANA1.0.7Guentert, P.
5data analysisCANDID1.0Guentert, P. & Herrmann, T.
6refinementCYANA1.0.7Guentert, P.