1YVC

Solution structure of the conserved protein from the gene locus MMP0076 of Methanococcus maripaludis. Northeast Structural Genomics target MrR5.


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.55% D2O/95% H2O100 mM NaCl4.5atmospheric atm293
23D_15N-separated_NOESY1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.55% D2O/95% H2O100 mM NaCl4.5atmospheric atm293
3HcCH-COSY,1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.55% D2O/95% H2O100 mM NaCl4.5atmospheric atm293
4Hi-Res CH-HSQC(st. Me assign), HNHA, HetNOE1.1mM MrR5 U-15N, 5%13C, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.55% D2O/95% H2O100 mM NaCl4.5atmospheric atm293
5TR backbone, H,C_TOCSYs, NH-HSQC1.2mM MrR5 U-13C,15N, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM NH4OAc, 0.02% NaN3, pH 4.55% D2O/95% H2O100 mM NaCl4.5atmospheric atm293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE500
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number56
Conformers Submitted Total Number10
Representative Model1 (lowest target function)
Additional NMR Experimental Information
DetailsCS assign: AutoAssign (bb), HcCH-cosy + TOCSYs (sc), AutoStructure (noe), Hyper (Dihe), Dyana,Xplor,CNS(imp. H2O) (sim. annealing) AutoQF quality factor calc.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1Varian
2collectionXwinNMR3.5Bruker Biospin
3processingNMRPipe2.1Delaglio (NIH)
4data analysisSparky3.91Goddard (UCSF)
5data analysisAutoAssign1.15.1Zimmerman (Rutgers)
6structure solutionAutoStructure2.1.0Huang (Rutgers)
7refinementAutoStructure2.1.0Huang (Rutgers)