1YR1

Structure of the major extracytoplasmic domain of the trans isomer of the bacterial cell division protein divib from geobacillus stearothermophilus


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D_13C-separated_NOESY1 mM DivIB, 150 mM NaCl, 10 mM sodium phosphate, 10 micromolar EDTA, 10 micromolar 4-(2-aminoethyl)benzenesulfonyl flouride (AEBSF), 0.02% sodium azide, pH 6.0100% D2O0.166.0ambient308
43D_15N-separated_NOESY1 mM DivIB, 150 mM NaCl, 10 mM sodium phosphate, 10 micromolar EDTA, 10 micromolar 4-(2-aminoethyl)benzenesulfonyl flouride (AEBSF), 0.02% sodium azide, pH 6.092.5% H2O, 7.5% D2O0.166.0ambient308
5HNHA1 mM DivIB, 150 mM NaCl, 10 mM sodium phosphate, 10 micromolar EDTA, 10 micromolar 4-(2-aminoethyl)benzenesulfonyl flouride (AEBSF), 0.02% sodium azide, pH 6.092.5% H2O, 7.5% D2O0.166.0ambient308
6HNHB1 mM DivIB, 150 mM NaCl, 10 mM sodium phosphate, 10 micromolar EDTA, 10 micromolar 4-(2-aminoethyl)benzenesulfonyl flouride (AEBSF), 0.02% sodium azide, pH 6.092.5% H2O, 7.5% D2O0.166.0ambient308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA500
2VarianINOVA600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics (CANDID/CYANA) followed by simulated annealing (XPLOR)The structures are based on a total of 2709 NOE-derived distance restraints, 82 restraints defining 41 hydrogen bonds, and 196 dihedral angle restraintsNMRPipe
NMR Ensemble Information
Conformer Selection Criterialowest energy
Conformers Calculated Total Number60
Conformers Submitted Total Number25
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipe2.2Frank Delaglio
2data analysisXEASY1.3.13Tai-he Xia and Christian Bartels
3structure solutionCANDID1.1Peter Guntert
4structure solutionCYANA1.1Peter Guntert
5refinementXPLOR3.1Axel T. Brunger