1YME

STRUCTURE OF CARBOXYPEPTIDASE


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.0941.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 51.62α = 90
b = 60.17β = 97.4
c = 47.17γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKU1991-04-19M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION1.5352331010.14818.4
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.4
p_staggered_tor14.5
p_scangle_it4.16
p_scbond_it2.899
p_planar_tor2.8
p_mcangle_it1.922
p_mcbond_it1.302
p_chiral_restr0.202
p_singtor_nbd0.182
p_multtor_nbd0.181
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor29.4
p_staggered_tor14.5
p_scangle_it4.16
p_scbond_it2.899
p_planar_tor2.8
p_mcangle_it1.922
p_mcbond_it1.302
p_chiral_restr0.202
p_singtor_nbd0.182
p_multtor_nbd0.181
p_xyhbond_nbd0.178
p_planar_d0.043
p_angle_d0.036
p_bond_d0.017
p_plane_restr0.015
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2437
Nucleic Acid Atoms
Solvent Atoms192
Heterogen Atoms1

Software

Software
Software NamePurpose
RIGAKUdata collection
PROLSQrefinement
TNTrefinement
RIGAKUdata reduction