1Y7R

1.7 A Crystal Structure of Protein of Unknown Function SA2161 from Meticillin-Resistant Staphylococcus aureus, Probable Acetyltransferase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7298mono-ammonium dihydrogen phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
238.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.168α = 90
b = 44.171β = 100.73
c = 71.408γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-11-01MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97948, 0.97959APS19-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75092.9259322577222
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7880.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.7202593224432134099.460.174190.174190.171650.21852RANDOM11.877
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.341.01-0.130.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_4_deg29.713
r_dihedral_angle_2_deg29.261
r_dihedral_angle_3_deg14.635
r_dihedral_angle_1_deg7.136
r_scangle_it4.383
r_scbond_it3.26
r_mcangle_it1.676
r_mcbond_it1.635
r_angle_refined_deg1.625
r_nbtor_refined0.348
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_4_deg29.713
r_dihedral_angle_2_deg29.261
r_dihedral_angle_3_deg14.635
r_dihedral_angle_1_deg7.136
r_scangle_it4.383
r_scbond_it3.26
r_mcangle_it1.676
r_mcbond_it1.635
r_angle_refined_deg1.625
r_nbtor_refined0.348
r_symmetry_hbond_refined0.317
r_symmetry_vdw_refined0.299
r_nbd_refined0.238
r_xyhbond_nbd_refined0.209
r_chiral_restr0.141
r_bond_refined_d0.016
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2070
Nucleic Acid Atoms
Solvent Atoms246
Heterogen Atoms40

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling
SOLVEphasing