1TXS

STEM-LOOP D OF THE CLOVERLEAF DOMAIN OF ENTEROVIRAL 5'UTR RNA


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1-2 mM unlabeled RNA, 25 mM sodium chloride, 25 mM sodium phosphate90% H2O, 10% D2025 mM sodium chloride, 25 mM sodium phosphate6.5ambient278
22D NOESY1-2 mM unlabeled RNA, 25 mM sodium chloride, 25 mM sodium phosphateD2O25 mM sodium chloride, 25 mM sodium phosphate6.5ambient303
3DQF-COSY1-2 mM unlabeled RNA, 25 mM sodium chloride, 25 mM sodium phosphateD2O25 mM sodium chloride, 25 mM sodium phosphate6.5ambient303
42D TOCSY1-2 mM unlabeled RNA, 25 mM sodium chloride, 25 mM sodium phosphateD2O25 mM sodium chloride, 25 mM sodium phosphate6.5ambient303
53D_13C-separated_NOESY1-2 mM 13C&15N-labeled RNA, 25 mM sodium chloride, 25 mM sodium phosphateD2O25 mM sodium chloride, 25 mM sodium phosphate6.5ambient303
62D H(N)CO1-2 mM 13C&15N-labeled RNA, 25 mM sodium chloride, 25 mM sodium phosphate90% H2O, 10% D2025 mM sodium chloride, 25 mM sodium phosphate6.5ambient278
72D HNN-COSY1-2 mM 13C&15N-labeled RNA, 25 mM sodium chloride, 25 mM sodium phosphate90% H2O, 10% D2025 mM sodium chloride, 25 mM sodium phosphate6.5ambient278
82D CT nondecoupled 13C-HSQC1-2 mM 13C&15N-labeled RNA, 25 mM sodium chloride, 25 mM sodium phosphate, 2.5% (WEIGHT/VOLUME) OF C12E6/N-HEXANOL MIXTURE (MOLAR RATIO 0.64)D2O25 mM sodium chloride, 25 mM sodium phosphate6.5ambient298
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
NMR Refinement
MethodDetailsSoftware
Torsion angle dynamics and restrained molecular dynamicsVNMR
NMR Ensemble Information
Conformer Selection CriteriaLOWEST TOTAL ENERGY
Conformers Calculated Total Number25
Conformers Submitted Total Number20
Representative Model1 (lowest total energy)
Additional NMR Experimental Information
DetailsThis structure was determined using 541 NOE restraints and 136 RDC restraints.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1Varian
2processingNMRPipe2.1Delaglio
3data analysisSparky3.1Goddard, Kneller
4refinementDYANA1.5Guntert
5refinementXPLORNIHBrunger