1TOV

Structural genomics of Caenorhabditis elegans: CAP-GLY domain of F53F4.3


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.5pH 6.50
Crystal Properties
Matthews coefficientSolvent content
2.8256.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.156α = 90
b = 64.156β = 90
c = 101.946γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2001-06-10MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7750100126270.001
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.771.8891.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSASTHROUGHOUT1.7748.81159862796.340.213190.210810.2587RANDOM27.051
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.21-0.11-0.210.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.535
r_scangle_it3.105
r_scbond_it1.813
r_mcangle_it1.255
r_angle_refined_deg1.012
r_mcbond_it0.654
r_nbd_refined0.169
r_symmetry_hbond_refined0.152
r_symmetry_vdw_refined0.134
r_xyhbond_nbd_refined0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg4.535
r_scangle_it3.105
r_scbond_it1.813
r_mcangle_it1.255
r_angle_refined_deg1.012
r_mcbond_it0.654
r_nbd_refined0.169
r_symmetry_hbond_refined0.152
r_symmetry_vdw_refined0.134
r_xyhbond_nbd_refined0.1
r_chiral_restr0.075
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_gen_planes_other
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms740
Nucleic Acid Atoms
Solvent Atoms81
Heterogen Atoms5

Software

Software
Software NamePurpose
HKL-2000data collection
HKL-2000data reduction
ISAS2001model building
REFMACrefinement
HKL-2000data scaling
ISASphasing